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Updated SPEC.md and DESIGN.md based on recent changes

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- Added math behind CTZ limits
- Added documentation over atomic moves
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Christopher Haster
2017-10-12 18:33:09 -05:00
parent f3578e3250
commit 454b588f73
2 changed files with 231 additions and 52 deletions
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250
DESIGN.md
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@@ -200,7 +200,7 @@ Now we could just leave files here, copying the entire file on write
provides the synchronization without the duplicated memory requirements provides the synchronization without the duplicated memory requirements
of the metadata blocks. However, we can do a bit better. of the metadata blocks. However, we can do a bit better.
## CTZ linked-lists ## CTZ skip-lists
There are many different data structures for representing the actual There are many different data structures for representing the actual
files in filesystems. Of these, the littlefs uses a rather unique [COW](https://upload.wikimedia.org/wikipedia/commons/0/0c/Cow_female_black_white.jpg) files in filesystems. Of these, the littlefs uses a rather unique [COW](https://upload.wikimedia.org/wikipedia/commons/0/0c/Cow_female_black_white.jpg)
@@ -246,19 +246,19 @@ runtime to just _read_ a file? That's awful. Keep in mind reading files are
usually the most common filesystem operation. usually the most common filesystem operation.
To avoid this problem, the littlefs uses a multilayered linked-list. For To avoid this problem, the littlefs uses a multilayered linked-list. For
every block that is divisible by a power of two, the block contains an every nth block where n is divisible by 2^x, the block contains a pointer
additional pointer that points back by that power of two. Another way of to block n-2^x. So each block contains anywhere from 1 to log2(n) pointers
thinking about this design is that there are actually many linked-lists that skip to various sections of the preceding list. If you're familiar with
threaded together, with each linked-lists skipping an increasing number data-structures, you may have recognized that this is a type of deterministic
of blocks. If you're familiar with data-structures, you may have also skip-list.
recognized that this is a deterministic skip-list.
To find the power of two factors efficiently, we can use the instruction The name comes from the use of the
[count trailing zeros (CTZ)](https://en.wikipedia.org/wiki/Count_trailing_zeros), [count trailing zeros (CTZ)](https://en.wikipedia.org/wiki/Count_trailing_zeros)
which is where this linked-list's name comes from. instruction, which allows us to calculate the power-of-two factors efficiently.
For a given block n, the block contains ctz(n)+1 pointers.
``` ```
Exhibit C: A backwards CTZ linked-list Exhibit C: A backwards CTZ skip-list
.--------. .--------. .--------. .--------. .--------. .--------. .--------. .--------. .--------. .--------. .--------. .--------.
| data 0 |<-| data 1 |<-| data 2 |<-| data 3 |<-| data 4 |<-| data 5 | | data 0 |<-| data 1 |<-| data 2 |<-| data 3 |<-| data 4 |<-| data 5 |
| |<-| |--| |<-| |--| | | | | |<-| |--| |<-| |--| | | |
@@ -266,6 +266,9 @@ Exhibit C: A backwards CTZ linked-list
'--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------'
``` ```
The additional pointers allow us to navigate the data-structure on disk
much more efficiently than in a single linked-list.
Taking exhibit C for example, here is the path from data block 5 to data Taking exhibit C for example, here is the path from data block 5 to data
block 1. You can see how data block 3 was completely skipped: block 1. You can see how data block 3 was completely skipped:
``` ```
@@ -285,15 +288,57 @@ The path to data block 0 is even more quick, requiring only two jumps:
'--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------' '--------'
``` ```
The CTZ linked-list has quite a few interesting properties. All of the pointers We can find the runtime complexity by looking at the path to any block from
in the block can be found by just knowing the index in the list of the current the block containing the most pointers. Every step along the path divides
block, and, with a bit of math, the amortized overhead for the linked-list is the search space for the block in half. This gives us a runtime of O(log n).
only two pointers per block. Most importantly, the CTZ linked-list has a To get to the block with the most pointers, we can perform the same steps
worst case lookup runtime of O(logn), which brings the runtime of reading a backwards, which keeps the asymptotic runtime at O(log n). The interesting
file down to O(n logn). Given that the constant runtime is divided by the part about this data structure is that this optimal path occurs naturally
amount of data we can store in a block, this is pretty reasonable. if we greedily choose the pointer that covers the most distance without passing
our target block.
Here is what it might look like to update a file stored with a CTZ linked-list: So now we have a representation of files that can be appended trivially with
a runtime of O(1), and can be read with a worst case runtime of O(n logn).
Given that the the runtime is also divided by the amount of data we can store
in a block, this is pretty reasonable.
Unfortunately, the CTZ skip-list comes with a few questions that aren't
straightforward to answer. What is the overhead? How do we handle more
pointers than we can store in a block?
One way to find the overhead per block is to look at the data structure as
multiple layers of linked-lists. Each linked-list skips twice as many blocks
as the previous linked-list. Or another way of looking at it is that each
linked-list uses half as much storage per block as the previous linked-list.
As we approach infinity, the number of pointers per block forms a geometric
series. Solving this geometric series gives us an average of only 2 pointers
per block.
![overhead per block](https://latex.codecogs.com/gif.latex?%5Clim_%7Bn%5Cto%5Cinfty%7D%5Cfrac%7B1%7D%7Bn%7D%5Csum_%7Bi%3D0%7D%5E%7Bn%7D%5Cleft%28%5Ctext%7Bctz%7D%28i%29&plus;1%5Cright%29%20%3D%20%5Csum_%7Bi%3D0%7D%5E%7B%5Cinfty%7D%5Cfrac%7B1%7D%7B2%5Ei%7D%20%3D%202)
Finding the maximum number of pointers in a block is a bit more complicated,
but since our file size is limited by the integer width we use to store the
size, we can solve for it. Setting the overhead of the maximum pointers equal
to the block size we get the following equation. Note that a smaller block size
results in more pointers, and a larger word width results in larger pointers.
![maximum overhead](https://latex.codecogs.com/gif.latex?B%20%3D%20%5Cfrac%7Bw%7D%7B8%7D%5Cleft%5Clceil%5Clog_2%5Cleft%28%5Cfrac%7B2%5Ew%7D%7BB-2%5Cfrac%7Bw%7D%7B8%7D%7D%5Cright%29%5Cright%5Crceil)
where:
B = block size in bytes
w = word width in bits
Solving the equation for B gives us the minimum block size for various word
widths:
32 bit CTZ skip-list = minimum block size of 104 bytes
64 bit CTZ skip-list = minimum block size of 448 bytes
Since littlefs uses a 32 bit word size, we are limited to a minimum block
size of 104 bytes. This is a perfectly reasonable minimum block size, with most
block sizes starting around 512 bytes. So we can avoid the additional logic
needed to avoid overflowing our block's capacity in the CTZ skip-list.
Here is what it might look like to update a file stored with a CTZ skip-list:
``` ```
block 1 block 2 block 1 block 2
.---------.---------. .---------.---------.
@@ -367,7 +412,7 @@ v
## Block allocation ## Block allocation
So those two ideas provide the grounds for the filesystem. The metadata pairs So those two ideas provide the grounds for the filesystem. The metadata pairs
give us directories, and the CTZ linked-lists give us files. But this leaves give us directories, and the CTZ skip-lists give us files. But this leaves
one big [elephant](https://upload.wikimedia.org/wikipedia/commons/3/37/African_Bush_Elephant.jpg) one big [elephant](https://upload.wikimedia.org/wikipedia/commons/3/37/African_Bush_Elephant.jpg)
of a question. How do we get those blocks in the first place? of a question. How do we get those blocks in the first place?
@@ -653,9 +698,17 @@ deorphan step that simply iterates through every directory in the linked-list
and checks it against every directory entry in the filesystem to see if it and checks it against every directory entry in the filesystem to see if it
has a parent. The deorphan step occurs on the first block allocation after has a parent. The deorphan step occurs on the first block allocation after
boot, so orphans should never cause the littlefs to run out of storage boot, so orphans should never cause the littlefs to run out of storage
prematurely. prematurely. Note that the deorphan step never needs to run in a readonly
filesystem.
And for my final trick, moving a directory: ## The move problem
Now we have a real problem. How do we move things between directories while
remaining power resilient? Even looking at the problem from a high level,
it seems impossible. We can update directory blocks atomically, but atomically
updating two independent directory blocks is not an atomic operation.
Here's the steps the filesystem may go through to move a directory:
``` ```
.--------. .--------.
|root dir|-. |root dir|-.
@@ -716,18 +769,135 @@ v
'--------' '--------'
``` ```
Note that once again we don't care about the ordering of directories in the We can leave any orphans up to the deorphan step to collect, but that doesn't
linked-list, so we can simply leave directories in their old positions. This help the case where dir A has both dir B and the root dir as parents if we
does make the diagrams a bit hard to draw, but the littlefs doesn't really lose power inconveniently.
care.
It's also worth noting that once again we have an operation that isn't actually Initially, you might think this is fine. Dir A _might_ end up with two parents,
atomic. After we add directory A to directory B, we could lose power, leaving but the filesystem will still work as intended. But then this raises the
directory A as a part of both the root directory and directory B. However, question of what do we do when the dir A wears out? For other directory blocks
there isn't anything inherent to the littlefs that prevents a directory from we can update the parent pointer, but for a dir with two parents we would need
having multiple parents, so in this case, we just allow that to happen. Extra work out how to update both parents. And the check for multiple parents would
care is taken to only remove a directory from the linked-list if there are need to be carried out for every directory, even if the directory has never
no parents left in the filesystem. been moved.
It also presents a bad user-experience, since the condition of ending up with
two parents is rare, it's unlikely user-level code will be prepared. Just think
about how a user would recover from a multi-parented directory. They can't just
remove one directory, since remove would report the directory as "not empty".
Other atomic filesystems simple COW the entire directory tree. But this
introduces a significant bit of complexity, which leads to code size, along
with a surprisingly expensive runtime cost during what most users assume is
a single pointer update.
Another option is to update the directory block we're moving from to point
to the destination with a sort of predicate that we have moved if the
destination exists. Unfortunately, the omnipresent concern of wear could
cause any of these directory entries to change blocks, and changing the
entry size before a move introduces complications if it spills out of
the current directory block.
So how do we go about moving a directory atomically?
We rely on the improbableness of power loss.
Power loss during a move is certainly possible, but it's actually relatively
rare. Unless a device is writing to a filesystem constantly, it's unlikely that
a power loss will occur during filesystem activity. We still need to handle
the condition, but runtime during a power loss takes a back seat to the runtime
during normal operations.
So what littlefs does is unelegantly simple. When littlefs moves a file, it
marks the file as "moving". This is stored as a single bit in the directory
entry and doesn't take up much space. Then littlefs moves the directory,
finishing with the complete remove of the "moving" directory entry.
```
.--------.
|root dir|-.
| pair 0 | |
.--------| |-'
| '--------'
| .-' '-.
| v v
| .--------. .--------.
'->| dir A |->| dir B |
| pair 0 | | pair 0 |
| | | |
'--------' '--------'
| update root directory to mark directory A as moving
v
.----------.
|root dir |-.
| pair 0 | |
.-------| moving A!|-'
| '----------'
| .-' '-.
| v v
| .--------. .--------.
'->| dir A |->| dir B |
| pair 0 | | pair 0 |
| | | |
'--------' '--------'
| update directory B to point to directory A
v
.----------.
|root dir |-.
| pair 0 | |
.-------| moving A!|-'
| '----------'
| .-----' '-.
| | v
| | .--------.
| | .->| dir B |
| | | | pair 0 |
| | | | |
| | | '--------'
| | .-------'
| v v |
| .--------. |
'->| dir A |-'
| pair 0 |
| |
'--------'
| update root to no longer contain directory A
v
.--------.
|root dir|-.
| pair 0 | |
.----| |-'
| '--------'
| |
| v
| .--------.
| .->| dir B |
| | | pair 0 |
| '--| |-.
| '--------' |
| | |
| v |
| .--------. |
'--->| dir A |-'
| pair 0 |
| |
'--------'
```
Now, if we run into a directory entry that has been marked as "moved", one
of two things is possible. Either the directory entry exists elsewhere in the
filesystem, or it doesn't. This is a O(n) operation, but only occurs in the
unlikely case we lost power during a move.
And we can easily fix the "moved" directory entry. Since we're already scanning
the filesystem during the deorphan step, we can also check for moved entries.
If we find one, we either remove the "moved" marking or remove the whole entry
if it exists elsewhere in the filesystem.
## Wear awareness ## Wear awareness
@@ -955,18 +1125,18 @@ So, to summarize:
1. The littlefs is composed of directory blocks 1. The littlefs is composed of directory blocks
2. Each directory is a linked-list of metadata pairs 2. Each directory is a linked-list of metadata pairs
3. These metadata pairs can be updated atomically by alternative which 3. These metadata pairs can be updated atomically by alternating which
metadata block is active metadata block is active
4. Directory blocks contain either references to other directories or files 4. Directory blocks contain either references to other directories or files
5. Files are represented by copy-on-write CTZ linked-lists 5. Files are represented by copy-on-write CTZ skip-lists which support O(1)
6. The CTZ linked-lists support appending in O(1) and reading in O(n logn) append and O(n logn) reading
7. Blocks are allocated by scanning the filesystem for used blocks in a 6. Blocks are allocated by scanning the filesystem for used blocks in a
fixed-size lookahead region is that stored in a bit-vector fixed-size lookahead region is that stored in a bit-vector
8. To facilitate scanning the filesystem, all directories are part of a 7. To facilitate scanning the filesystem, all directories are part of a
linked-list that is threaded through the entire filesystem linked-list that is threaded through the entire filesystem
9. If a block develops an error, the littlefs allocates a new block, and 8. If a block develops an error, the littlefs allocates a new block, and
moves the data and references of the old block to the new. moves the data and references of the old block to the new.
10. Any case where an atomic operation is not possible, it is taken care of 9. Any case where an atomic operation is not possible, mistakes are resolved
by a deorphan step that occurs on the first allocation after boot by a deorphan step that occurs on the first allocation after boot
That's the little filesystem. Thanks for reading! That's the little filesystem. Thanks for reading!

33
SPEC.md
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@@ -121,13 +121,18 @@ Here's the layout of entries on disk:
**Entry type** - Type of the entry, currently this is limited to the following: **Entry type** - Type of the entry, currently this is limited to the following:
- 0x11 - file entry - 0x11 - file entry
- 0x22 - directory entry - 0x22 - directory entry
- 0xe2 - superblock entry - 0x2e - superblock entry
Additionally, the type is broken into two 4 bit nibbles, with the lower nibble Additionally, the type is broken into two 4 bit nibbles, with the upper nibble
specifying the type's data structure used when scanning the filesystem. The specifying the type's data structure used when scanning the filesystem. The
upper nibble clarifies the type further when multiple entries share the same lower nibble clarifies the type further when multiple entries share the same
data structure. data structure.
The highest bit is reserved for marking the entry as "moved". If an entry
is marked as "moved", the entry may also exist somewhere else in the
filesystem. If the entry exists elsewhere, this entry must be treated as
though it does not exist.
**Entry length** - Length in bytes of the entry-specific data. This does **Entry length** - Length in bytes of the entry-specific data. This does
not include the entry type size, attributes, or name. The full size in bytes not include the entry type size, attributes, or name. The full size in bytes
of the entry is 4 + entry length + attribute length + name length. of the entry is 4 + entry length + attribute length + name length.
@@ -175,7 +180,7 @@ Here's the layout of the superblock entry:
| offset | size | description | | offset | size | description |
|--------|------------------------|----------------------------------------| |--------|------------------------|----------------------------------------|
| 0x00 | 8 bits | entry type (0xe2 for superblock entry) | | 0x00 | 8 bits | entry type (0x2e for superblock entry) |
| 0x01 | 8 bits | entry length (20 bytes) | | 0x01 | 8 bits | entry length (20 bytes) |
| 0x02 | 8 bits | attribute length | | 0x02 | 8 bits | attribute length |
| 0x03 | 8 bits | name length (8 bytes) | | 0x03 | 8 bits | name length (8 bytes) |
@@ -208,7 +213,7 @@ Here's an example of a complete superblock:
(32 bits) revision count = 3 (0x00000003) (32 bits) revision count = 3 (0x00000003)
(32 bits) dir size = 52 bytes, end of dir (0x00000034) (32 bits) dir size = 52 bytes, end of dir (0x00000034)
(64 bits) tail pointer = 3, 2 (0x00000003, 0x00000002) (64 bits) tail pointer = 3, 2 (0x00000003, 0x00000002)
(8 bits) entry type = superblock (0xe2) (8 bits) entry type = superblock (0x2e)
(8 bits) entry length = 20 bytes (0x14) (8 bits) entry length = 20 bytes (0x14)
(8 bits) attribute length = 0 bytes (0x00) (8 bits) attribute length = 0 bytes (0x00)
(8 bits) name length = 8 bytes (0x08) (8 bits) name length = 8 bytes (0x08)
@@ -220,7 +225,7 @@ Here's an example of a complete superblock:
(32 bits) crc = 0xc50b74fa (32 bits) crc = 0xc50b74fa
00000000: 03 00 00 00 34 00 00 00 03 00 00 00 02 00 00 00 ....4........... 00000000: 03 00 00 00 34 00 00 00 03 00 00 00 02 00 00 00 ....4...........
00000010: e2 14 00 08 03 00 00 00 02 00 00 00 00 02 00 00 ................ 00000010: 2e 14 00 08 03 00 00 00 02 00 00 00 00 02 00 00 ................
00000020: 00 04 00 00 01 00 01 00 6c 69 74 74 6c 65 66 73 ........littlefs 00000020: 00 04 00 00 01 00 01 00 6c 69 74 74 6c 65 66 73 ........littlefs
00000030: fa 74 0b c5 .t.. 00000030: fa 74 0b c5 .t..
``` ```
@@ -262,15 +267,19 @@ Here's an example of a directory entry:
Files are stored in entries with a pointer to the head of the file and the Files are stored in entries with a pointer to the head of the file and the
size of the file. This is enough information to determine the state of the size of the file. This is enough information to determine the state of the
CTZ linked-list that is being referenced. CTZ skip-list that is being referenced.
How files are actually stored on disk is a bit complicated. The full How files are actually stored on disk is a bit complicated. The full
explanation of CTZ linked-lists can be found in [DESIGN.md](DESIGN.md#ctz-linked-lists). explanation of CTZ skip-lists can be found in [DESIGN.md](DESIGN.md#ctz-skip-lists).
A terribly quick summary: For every nth block where n is divisible by 2^x, A terribly quick summary: For every nth block where n is divisible by 2^x,
the block contains a pointer that points x blocks towards the beginning of the the block contains a pointer to block n-2^x. These pointers are stored in
file. These pointers are stored in order of x in each block of the file increasing order of x in each block of the file preceding the data in the
immediately before the data in the block. block.
The maximum number of pointers in a block is bounded by the maximum file size
divided by the block size. With 32 bits for file size, this results in a
minimum block size of 104 bytes.
Here's the layout of a file entry: Here's the layout of a file entry:
@@ -286,7 +295,7 @@ Here's the layout of a file entry:
| 0xc+a | name length bytes | directory name | | 0xc+a | name length bytes | directory name |
**File head** - Pointer to the block that is the head of the file's CTZ **File head** - Pointer to the block that is the head of the file's CTZ
linked-list. skip-list.
**File size** - Size of file in bytes. **File size** - Size of file in bytes.